PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10026480m
Common NameCARUB_v10026480mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 420aa    MW: 46735.8 Da    PI: 9.9076
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10026480mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-057395123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C++C+k F r  nL+ H r H
  Carubv10026480m 73 FFCEICSKGFQREQNLQLHKRGH 95
                     67******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.9E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.43E-77295No hitNo description
SMARTSM003550.0197395IPR015880Zinc finger, C2H2-like
PfamPF121711.7E-57395IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.7417395IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355120115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-4138171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.43E-7145170No hitNo description
SMARTSM00355180150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNNQDMMIPH NDDRLSFSSF VHPQEHITPN SNPNSKHAST NTPKKKRNLP GNPDPDAEVI  60
ALSPKSLMAT NRFFCEICSK GFQREQNLQL HKRGHNLPWK LKQRTNKNQV KKKVYICPEK  120
SCVHHDPTRA LGDLTGIKKH FSRKHGEKKW KCDKCSKKYA VVSDWKAHTK ICGSREFRCD  180
CGTLFSRKDS FISHRSFCDV LAEESAKFFS VPSPLAANST ISTVADTNNP VLIQSLTCTA  240
DLNVNNNHST LLGKKFINSE PIPQRANAFA FSPPPTPRGT SDNSVHNLWK LQEEECSHQS  300
LLNGYMNNNK NISHKGISQN QENAIIKKGN IYSGSNSSDA NIASLFSYNQ EAGNLASLSA  360
TTLLQKVAEM GSSSRSDTGT LLGLMTSSIF NNRMPNSDCL KAKNKKEEWT RDFLGVGKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264280.0BT026428.1 Arabidopsis thaliana At5g60470 mRNA, complete cds.
GenBankDQ0567310.0DQ056731.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At5g60470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280537.10.0hypothetical protein CARUB_v10026480mg
SwissprotF4JYZ80.0IDD13_ARATH; Protein indeterminate-domain 13
TrEMBLR0GM860.0R0GM86_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0008_25450.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.10.0C2H2 family protein